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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
357
ChIP-seq
5
total RNA-seq
1
Hi-C
1
WGBS
Assay category
357
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
337
transcription factor
82
recombinant protein
RNA binding protein
62
control
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
281
November, 2017
40
November, 2018
26
December, 2018
17
January, 2019
Available data
518
bam
459
bigWig
364
fastq
341
bed narrowPeak
294
bigBed narrowPeak
119
tsv
55
bed broadPeak
55
bigBed broadPeak
20
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
2
tar
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
364
Homo sapiens
Biosample type
404
primary cell
364
cell line
362
tissue
135
in vitro differentiated cells
4
stem cell
Organ
314
liver
50
blood
50
bodily fluid
Project
364
AMP
Genome assembly (visualization)
307
hg19
264
GRCh38
Lab
364
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
20
inconsistent control read length
5
inconsistent control run_type
files.file_type!
bed bed3
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
364 results
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ChIP-seq
total RNA-seq
Hi-C
WGBS
cell line
HepG2
307
5
1
1
GM12878
50
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