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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
301
ChIP-seq
1
DNase-seq
Assay category
301
DNA binding
1
DNA accessibility
Target of assay
288
transcription factor
81
recombinant protein
57
RNA binding protein
26
chromatin remodeller
8
histone
8
histone modification
5
narrow histone mark
3
broad histone mark
1
other context
1
other post-translational modification
Date released
197
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
7
October, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
302
Homo sapiens
Biosample type
385
tissue
302
cell line
62
primary cell
16
in vitro differentiated cells
Organ
241
liver
54
blood
54
bodily fluid
6
pancreas
1
epithelium
1
kidney
Project
302
AMP
Genome assembly (visualization)
298
hg19
278
GRCh38
Lab
302
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
DNase-seq
cell line
HepG2
241
GM12878
54
Panc1
6
glomerular visceral epithelial cell
1
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