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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
104
total RNA-seq
13
ATAC-seq
2
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
407
DNA binding
104
Transcription
15
DNA accessibility
1
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
13
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
517
bigWig
509
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
hic
1
bed bed3
1
hdf5
Organism
528
Homo sapiens
Biosample type
1744
tissue
623
primary cell
528
cell line
293
in vitro differentiated cells
3
stem cell
Organ
329
liver
64
artery
64
blood vessel
64
heart
64
vasculature
57
pancreas
55
blood
55
bodily fluid
51
epithelium
12
kidney
8
embryo
Project
524
AMP
4
T1D
Genome assembly (visualization)
528
hg19
464
GRCh38
Lab
514
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
59
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
hic
BIOSAMPLE
ASSAY
528 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
322
5
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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