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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
464
DNA binding
Target of assay
356
transcription factor
89
recombinant protein
76
control
65
RNA binding protein
30
chromatin remodeller
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
2
other context
2
other post-translational modification
Date released
303
November, 2017
60
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
1
March, 2020
1
May, 2021
Available data
465
bam
420
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
tagAlign
3
tar
Organism
464
Homo sapiens
Biosample type
669
tissue
464
cell line
179
primary cell
158
in vitro differentiated cells
3
stem cell
Organ
366
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
10
kidney
Project
462
AMP
2
T1D
Genome assembly (visualization)
390
hg19
332
GRCh38
Lab
446
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
assay_title!
STARR-seq
BIOSAMPLE
ASSAY
464 results
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ChIP-seq
cell line
HepG2
366
GM12878
60
EndoC_BH1
15
Panc1
13
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
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