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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
27
ATAC-seq
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
64
DNA binding
29
DNA accessibility
3
3D chromatin structure
2
Transcription
1
DNA sequencing
Target of assay
24
transcription factor
22
histone
22
histone modification
21
control
11
broad histone mark
11
narrow histone mark
7
recombinant protein
3
nucleotide modification
2
RNA binding protein
Date released
27
August, 2021
26
October, 2019
18
February, 2021
17
May, 2021
15
November, 2019
6
February, 2023
6
November, 2020
2
March, 2020
2
March, 2023
1
October, 2022
Available data
522
bam
467
bigWig
fastq
350
bed narrowPeak
301
bigBed narrowPeak
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
116
Homo sapiens
Biosample type
1421
tissue
527
primary cell
137
in vitro differentiated cells
120
cell line
2
stem cell
Organ
58
pancreas
44
epithelium
24
liver
14
artery
14
blood vessel
14
heart
14
vasculature
13
kidney
1
blood
bodily fluid
Project
111
AMP
7
T1D
2
community
Genome assembly (visualization)
62
hg19
44
GRCh38
Lab
82
AMP-T2D consortium
25
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
53
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
inconsistent assembly
files.file_type!
tsv
fastq
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
120 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Hi-C
Capture-C
DNase-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
EndoC_BH1
15
18
6
3
1
2
2
1
HepG2
18
1
2
1
1
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
EndoC-BH1
1
1
HEK293T
2
iPSC derived cell line
2
MIN6
1
Synthesized DNA
1
glomerular visceral epithelial cell
1
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