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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
1
DNase-seq
1
Hi-C
1
pCHi-C
Assay category
58
DNA binding
1
3D chromatin structure
1
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
2
October, 2019
1
February, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
61
Homo sapiens
Biosample type
205
tissue
61
cell line
59
primary cell
26
in vitro differentiated cells
3
stem cell
Organ
59
liver
2
pancreas
Project
61
AMP
Genome assembly (visualization)
61
hg19
46
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
DNase-seq
Hi-C
pCHi-C
cell line
HepG2
58
1
Panc1
1
1
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