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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
321
ChIP-seq
2
DNase-seq
1
WGBS
Assay category
321
DNA binding
2
DNA accessibility
1
DNA methylation
Target of assay
296
transcription factor
81
recombinant protein
57
RNA binding protein
28
chromatin remodeller
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
57
November, 2018
27
December, 2018
15
January, 2019
8
October, 2019
Available data
463
bam
454
bigWig
358
bed narrowPeak
323
bigBed narrowPeak
321
fastq
104
tsv
45
bed broadPeak
45
bigBed broadPeak
14
tagAlign
2
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
324
Homo sapiens
Biosample type
571
tissue
324
cell line
105
primary cell
15
in vitro differentiated cells
Organ
262
liver
54
blood
54
bodily fluid
7
pancreas
1
epithelium
1
kidney
Project
324
AMP
Genome assembly (visualization)
351
hg19
324
GRCh38
Lab
324
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
BIOSAMPLE
ASSAY
324 results
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ChIP-seq
DNase-seq
WGBS
cell line
HepG2
261
1
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
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