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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
411
ChIP-seq
Assay category
411
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
13
October, 2019
11
November, 2019
5
February, 2021
1
March, 2020
1
May, 2021
Available data
465
bam
420
fastq
411
bigWig
392
bed narrowPeak
353
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
411
Homo sapiens
Biosample type
575
tissue
411
cell line
247
primary cell
115
in vitro differentiated cells
2
stem cell
Organ
326
liver
54
blood
54
bodily fluid
19
pancreas
13
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
409
AMP
2
T1D
Genome assembly (visualization)
407
hg19
346
GRCh38
Lab
397
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
411 results
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ChIP-seq
cell line
HepG2
326
GM12878
54
EndoC_BH1
13
Panc1
6
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
iPSC derived cell line
1
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