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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
384
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
331
transcription factor
88
recombinant protein
61
RNA binding protein
37
histone
37
histone modification
28
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
555
bam
495
bigWig
399
fastq
377
bed narrowPeak
328
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
495
Homo sapiens
Biosample type
1729
tissue
613
primary cell
495
cell line
259
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
50
epithelium
28
blood
28
bodily fluid
12
kidney
8
embryo
Project
491
AMP
4
T1D
Genome assembly (visualization)
490
hg19
427
GRCh38
Lab
481
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
month_released!
December, 2018
BIOSAMPLE
ASSAY
495 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
EndoC_BH1
13
33
2
GM12878
27
1
H1-hESC
8
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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