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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1
DNase-seq
1
Hi-C
1
pCHi-C
1
whole genome sequencing assay
Assay category
1
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
2
October, 2019
1
August, 2021
1
February, 2021
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
4
Homo sapiens
Biosample type
205
tissue
37
primary cell
25
in vitro differentiated cells
4
cell line
3
stem cell
Organ
2
liver
2
pancreas
Project
4
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
4 results
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DNase-seq
Hi-C
pCHi-C
whole genome sequencing assay
cell line
HepG2
1
1
Panc1
1
1
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