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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
360
ChIP-seq
5
total RNA-seq
2
pCHi-C
1
ATAC-seq
1
Hi-C
1
WGBS
Assay category
360
DNA binding
5
Transcription
1
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
82
recombinant protein
56
control
53
RNA binding protein
20
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
5
January, 2019
2
February, 2021
1
December, 2018
1
May, 2020
Available data
367
fastq
366
bam
318
bigWig
294
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
6
tsv
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
370
Homo sapiens
Biosample type
370
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
Organ
370
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
17
kidney
8
embryo
1
mammary gland
Project
370
AMP
Genome assembly (visualization)
315
hg19
268
GRCh38
Lab
370
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
370 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
Hi-C
WGBS
cell line
HepG2
360
5
2
1
1
1
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