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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
total RNA-seq
25
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
STARR-seq
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
37
Transcription
25
DNA binding
20
DNA accessibility
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
8
control
8
transcription factor
7
recombinant protein
6
broad histone mark
6
narrow histone mark
3
nucleotide modification
1
RNA binding protein
Date released
26
February, 2021
21
May, 2021
16
November, 2019
15
October, 2019
7
March, 2020
6
November, 2020
4
August, 2021
1
February, 2023
Available data
64
bam
60
bigWig
40
tsv
22
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
95
Homo sapiens
Biosample type
406
primary cell
313
tissue
96
cell line
24
in vitro differentiated cells
Organ
400
liver
92
pancreas
79
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
92
AMP
4
T1D
Genome assembly (visualization)
62
hg19
59
GRCh38
Lab
88
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
Audit category:
91
inconsistent ontology term
month_released!
May, 2020
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
STARR-seq
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
15
19
6
2
1
1
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
RCC 7860 VHL
1
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