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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
9
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
20
DNA accessibility
9
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
10
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
45
bam
44
bigWig
35
tsv
9
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
72
Homo sapiens
Biosample type
375
primary cell
73
cell line
17
in vitro differentiated cells
15
tissue
Organ
391
liver
82
pancreas
73
epithelium
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
19
kidney
8
embryo
1
mammary gland
Project
69
AMP
4
T1D
Genome assembly (visualization)
46
hg19
43
GRCh38
Lab
67
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
70
inconsistent ontology term
month_released!
May, 2020
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
9
6
2
1
1
glomerular visceral epithelial cell
1
1
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