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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
304
ChIP-seq
Assay category
304
DNA binding
Target of assay
304
transcription factor
80
control
73
recombinant protein
44
RNA binding protein
38
histone
38
histone modification
23
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
5
February, 2021
1
November, 2019
Available data
300
bigWig
296
bed narrowPeak
292
bam
280
fastq
272
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
304
Homo sapiens
Biosample type
304
cell line
82
tissue
49
in vitro differentiated cells
10
primary cell
Organ
252
liver
39
blood
39
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
1
epithelium
1
pancreas
Project
304
AMP
Genome assembly (visualization)
298
hg19
253
GRCh38
Lab
293
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
9
missing controlled_by
Audit category:
10
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2018
BIOSAMPLE
ASSAY
304 results
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ChIP-seq
cell line
HepG2
252
GM12878
39
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
iPSC derived cell line
1
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