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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
Assay category
16
DNA binding
Target of assay
354
transcription factor
82
recombinant protein
74
control
65
RNA binding protein
31
histone
31
histone modification
30
chromatin remodeller
16
narrow histone mark
15
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
7
November, 2017
4
November, 2019
October, 2019
2
August, 2021
1
January, 2019
1
March, 2020
1
May, 2021
Available data
16
bigWig
15
bed narrowPeak
14
bam
8
fastq
7
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
5
tagAlign
Organism
16
Homo sapiens
Biosample type
195
tissue
106
primary cell
55
in vitro differentiated cells
16
cell line
1
stem cell
Organ
9
liver
6
epithelium
6
pancreas
1
blood
1
bodily fluid
Project
14
AMP
2
T1D
Genome assembly (visualization)
16
hg19
13
GRCh38
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
month_released!
October, 2019
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
cell line
HepG2
9
EndoC_BH1
6
GM12878
1
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