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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
22
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
36
DNA binding
22
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
25
transcription factor
7
RNA binding protein
7
control
6
chromatin remodeller
4
histone
4
histone modification
3
narrow histone mark
1
broad histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
42
bigWig
31
bam
29
bed narrowPeak
23
fastq
22
tsv
15
bigBed narrowPeak
1
bedpe bed3+
1
hic
1
vcf
Organism
67
Homo sapiens
Biosample type
236
tissue
67
cell line
42
in vitro differentiated cells
4
primary cell
Organ
36
liver
18
blood
18
bodily fluid
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
67
AMP
Genome assembly (visualization)
43
hg19
28
GRCh38
Lab
34
Bing Ren, UCSD
33
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
BIOSAMPLE
ASSAY
67 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
18
14
2
1
1
GM12878
18
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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