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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
17
total RNA-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
WGBS
1
whole genome sequencing assay
Assay category
78
DNA binding
17
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
68
transcription factor
22
RNA binding protein
16
recombinant protein
7
chromatin remodeller
7
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
79
bigWig
70
bed narrowPeak
69
bam
61
fastq
56
bigBed narrowPeak
17
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
105
Homo sapiens
Biosample type
255
tissue
105
cell line
42
in vitro differentiated cells
5
primary cell
Organ
77
liver
15
blood
15
bodily fluid
8
embryo
2
epithelium
2
kidney
2
pancreas
Project
105
AMP
Genome assembly (visualization)
77
hg19
65
GRCh38
Lab
71
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
WGBS
whole genome sequencing assay
cell line
HepG2
63
9
2
1
1
1
GM12878
15
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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