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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
2
Hi-C
1
ATAC-seq
1
total RNA-seq
Assay category
40
DNA binding
2
3D chromatin structure
1
DNA accessibility
1
Transcription
Target of assay
26
transcription factor
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
3
RNA binding protein
2
chromatin remodeller
2
control
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
42
bam
39
bed narrowPeak
39
bigWig
28
fastq
27
bigBed narrowPeak
1
bedpe bed3+
1
hic
1
tsv
Organism
44
Homo sapiens
Biosample type
47
tissue
44
cell line
5
in vitro differentiated cells
Organ
27
blood
27
bodily fluid
16
epithelium
16
pancreas
1
liver
Project
44
AMP
Genome assembly (visualization)
41
hg19
40
GRCh38
Lab
44
AMP-T2D consortium
Audit category:
16
inconsistent ontology term
1
inconsistent control
BIOSAMPLE
ASSAY
44 results
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ChIP-seq
Hi-C
ATAC-seq
total RNA-seq
cell line
GM12878
27
EndoC_BH1
13
1
1
1
HepG2
1
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