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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
323
ChIP-seq
78
total RNA-seq
9
ATAC-seq
1
pCHi-C
Assay category
323
DNA binding
78
Transcription
9
DNA accessibility
Target of assay
246
transcription factor
66
recombinant protein
59
control
34
RNA binding protein
15
chromatin remodeller
15
histone
15
histone modification
8
broad histone mark
7
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
409
bam
351
bigWig
315
fastq
263
bed narrowPeak
249
bigBed narrowPeak
78
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
Organism
411
Homo sapiens
Biosample type
627
tissue
411
cell line
57
primary cell
26
in vitro differentiated cells
Organ
317
liver
66
artery
66
blood vessel
66
heart
66
vasculature
26
epithelium
26
pancreas
Project
411
AMP
Genome assembly (visualization)
359
hg19
309
GRCh38
Lab
411
AMP-T2D consortium
Audit category:
26
inconsistent ontology term
1
inconsistent replicate
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
BIOSAMPLE
ASSAY
411 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
cell line
HepG2
315
1
1
smooth muscle cell of the coronary artery
6
52
8
EndoC_BH1
26
iPSC derived cell line
2
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