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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
13
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
7
recombinant protein
7
transcription factor
6
histone
6
histone modification
3
broad histone mark
3
narrow histone mark
Date released
217
November, 2017
92
February, 2021
57
November, 2018
27
December, 2018
20
January, 2019
20
October, 2019
13
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
20
bigWig
19
bam
15
bed narrowPeak
8
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
20
Homo sapiens
Biosample type
161
tissue
22
primary cell
20
cell line
4
in vitro differentiated cells
Organ
12
kidney
8
pancreas
2
epithelium
Project
20
AMP
Genome assembly (visualization)
20
GRCh38
20
hg19
Lab
20
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
Panc1
6
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
glomerular visceral epithelial cell
1
1
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