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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
4
total RNA-seq
2
DNase-seq
Assay category
19
DNA binding
4
Transcription
2
DNA accessibility
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
broad histone mark
3
narrow histone mark
Date released
306
November, 2017
95
February, 2021
61
November, 2018
27
December, 2018
25
October, 2019
23
January, 2019
9
November, 2019
8
August, 2021
5
March, 2020
5
May, 2021
Available data
25
bam
17
bigWig
12
bed narrowPeak
5
bigBed narrowPeak
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
25
Homo sapiens
Biosample type
147
tissue
25
cell line
19
primary cell
4
in vitro differentiated cells
Organ
15
kidney
10
pancreas
2
epithelium
Project
25
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
25
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
total RNA-seq
DNase-seq
cell line
Panc1
9
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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