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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
338
ChIP-seq
4
total RNA-seq
2
DNase-seq
1
Hi-C
Assay category
338
DNA binding
4
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
248
transcription factor
73
recombinant protein
65
control
34
RNA binding protein
22
histone
22
histone modification
15
chromatin remodeller
12
broad histone mark
10
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
96
February, 2021
61
November, 2018
44
August, 2021
30
October, 2019
28
December, 2018
23
January, 2019
21
May, 2021
16
November, 2019
11
March, 2020
6
February, 2023
6
November, 2020
2
March, 2023
1
January, 2018
1
May, 2020
1
October, 2022
Available data
343
bam
315
fastq
288
bigWig
264
bed narrowPeak
257
bigBed narrowPeak
59
bed broadPeak
59
bigBed broadPeak
12
tagAlign
4
tsv
3
tar
2
bed bed3+
1
hdf5
Organism
345
Homo sapiens
Biosample type
345
cell line
324
tissue
43
primary cell
8
in vitro differentiated cells
Organ
315
liver
15
kidney
15
pancreas
2
epithelium
Project
345
AMP
Genome assembly (visualization)
286
hg19
237
GRCh38
Lab
345
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
BIOSAMPLE
ASSAY
345 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
cell line
HepG2
315
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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