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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
437
ChIP-seq
71
total RNA-seq
9
ATAC-seq
1
DNase-seq
1
WGBS
Assay category
437
DNA binding
71
Transcription
10
DNA accessibility
1
DNA methylation
Target of assay
348
transcription factor
89
recombinant protein
68
control
63
RNA binding protein
30
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
314
November, 2017
69
February, 2021
61
November, 2018
27
December, 2018
23
January, 2019
15
October, 2019
8
August, 2021
2
March, 2020
Available data
519
bam
466
bigWig
427
fastq
383
bed narrowPeak
348
bigBed narrowPeak
85
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
txt
1
vcf
Organism
519
Homo sapiens
Biosample type
1478
tissue
519
cell line
415
primary cell
288
in vitro differentiated cells
3
stem cell
Organ
366
liver
66
artery
66
blood vessel
66
heart
66
vasculature
pancreas
60
blood
60
bodily fluid
51
epithelium
15
kidney
8
embryo
Project
519
AMP
Genome assembly (visualization)
455
hg19
409
GRCh38
Lab
519
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
519 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
359
5
1
1
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
H1-hESC
8
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
2
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