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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
6
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
15
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
16
November, 2019
6
November, 2020
5
March, 2020
2
August, 2021
October, 2019
1
February, 2023
Available data
49
bam
48
bigWig
34
tsv
14
bed narrowPeak
1
bedpe bed3+
1
hic
Organism
76
Homo sapiens
Biosample type
373
primary cell
77
cell line
24
in vitro differentiated cells
15
tissue
Organ
401
liver
77
epithelium
77
pancreas
66
artery
66
blood vessel
66
heart
66
vasculature
61
blood
61
bodily fluid
8
embryo
4
kidney
1
mammary gland
Project
73
AMP
4
T1D
Genome assembly (visualization)
50
hg19
47
GRCh38
Lab
71
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
76
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
cell line
EndoC_BH1
33
19
15
6
2
1
1
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