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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
9
total RNA-seq
2
Hi-C
2
STARR-seq
2
pCHi-C
1
whole genome sequencing assay
Assay category
117
DNA binding
9
Transcription
2
3D chromatin structure
1
DNA sequencing
Target of assay
60
control
52
transcription factor
7
RNA binding protein
5
histone
5
histone modification
3
narrow histone mark
2
broad histone mark
2
chromatin remodeller
1
recombinant protein
Date released
98
November, 2017
31
August, 2021
1
December, 2018
1
February, 2021
1
May, 2020
1
November, 2018
Available data
100
fastq
98
bam
65
bigWig
46
bed narrowPeak
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
10
tsv
3
tagAlign
3
tar
1
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
133
Homo sapiens
Biosample type
133
cell line
123
tissue
3
primary cell
1
in vitro differentiated cells
Organ
133
liver
37
pancreas
30
epithelium
7
blood
7
bodily fluid
7
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
133
AMP
Genome assembly (visualization)
330
hg19
GRCh38
Lab
102
AMP-T2D consortium
31
Bing Ren, UCSD
Audit category:
8
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
pCHi-C
whole genome sequencing assay
cell line
HepG2
117
9
2
2
2
1
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