Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
9
total RNA-seq
2
STARR-seq
1
Hi-C
1
WGBS
1
pCHi-C
1
whole genome sequencing assay
Assay category
56
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
47
control
9
transcription factor
4
recombinant protein
3
RNA binding protein
Date released
49
November, 2017
16
August, 2021
4
November, 2018
1
December, 2018
1
May, 2020
Available data
54
fastq
52
bam
10
tsv
5
bigWig
4
bed narrowPeak
4
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
vcf
Organism
71
Homo sapiens
Biosample type
93
tissue
71
cell line
1
in vitro differentiated cells
1
primary cell
Organ
71
liver
34
pancreas
27
epithelium
7
kidney
6
blood
6
bodily fluid
2
artery
2
blood vessel
2
heart
2
vasculature
1
mammary gland
Project
71
AMP
Genome assembly (visualization)
hg19
268
GRCh38
Lab
55
AMP-T2D consortium
16
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
71 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
STARR-seq
Hi-C
WGBS
pCHi-C
whole genome sequencing assay
cell line
HepG2
56
9
2
1
1
1
1
See all biosamples
Download