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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
27
ChIP-seq
19
ATAC-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
33
Transcription
27
DNA binding
20
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
transcription factor
Date released
26
February, 2021
21
May, 2021
15
November, 2019
15
October, 2019
6
November, 2020
5
March, 2020
2
August, 2021
1
February, 2023
Available data
62
bam
55
bigWig
34
tsv
20
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
1
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
1
hdf5
1
hic
Organism
90
Homo sapiens
Biosample type
488
tissue
346
primary cell
91
cell line
2
in vitro differentiated cells
Organ
104
liver
91
pancreas
78
epithelium
62
artery
62
blood vessel
62
heart
62
vasculature
12
kidney
10
blood
10
bodily fluid
8
embryo
1
mammary gland
Project
87
AMP
4
T1D
Genome assembly (visualization)
57
hg19
54
GRCh38
Lab
85
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
75
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
91 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
cell line
EndoC_BH1
33
14
19
6
2
1
1
Panc1
13
1
1
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