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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
465
ChIP-seq
Assay category
465
DNA binding
115
Transcription
31
DNA accessibility
4
3D chromatin structure
1
DNA methylation
1
DNA sequencing
Target of assay
361
transcription factor
89
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
307
November, 2017
60
November, 2018
27
December, 2018
19
October, 2019
18
January, 2019
17
August, 2021
8
February, 2021
7
November, 2019
1
March, 2020
1
May, 2021
Available data
447
bam
412
fastq
393
bigWig
375
bed narrowPeak
343
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
14
tagAlign
3
tar
Organism
465
Homo sapiens
Biosample type
584
tissue
465
cell line
157
primary cell
142
in vitro differentiated cells
2
stem cell
Organ
369
liver
60
blood
60
bodily fluid
18
pancreas
10
kidney
9
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
Project
463
AMP
2
T1D
Genome assembly (visualization)
389
hg19
330
GRCh38
Lab
448
AMP-T2D consortium
17
Bing Ren, UCSD
Audit category:
19
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
465 results
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ChIP-seq
cell line
HepG2
369
GM12878
60
EndoC_BH1
9
Panc1
9
smooth muscle cell of the coronary artery
6
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
iPSC derived cell line
2
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