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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
393
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
260
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
21
August, 2021
20
January, 2019
17
October, 2019
7
March, 2020
6
November, 2019
5
May, 2021
1
January, 2018
Available data
564
bam
504
bigWig
419
fastq
387
bed narrowPeak
345
bigBed narrowPeak
119
tsv
51
bed broadPeak
51
bigBed broadPeak
14
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
504
Homo sapiens
Biosample type
1499
tissue
504
cell line
495
primary cell
222
in vitro differentiated cells
2
stem cell
Organ
323
liver
56
artery
56
blood vessel
56
heart
56
vasculature
55
blood
55
bodily fluid
47
pancreas
44
epithelium
12
kidney
8
embryo
Project
500
AMP
4
T1D
Genome assembly (visualization)
499
hg19
438
GRCh38
Lab
491
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
52
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
504 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
317
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
EndoC_BH1
7
33
2
H1-hESC
8
Panc1
3
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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