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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
392
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
356
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
261
November, 2017
83
February, 2021
57
November, 2018
27
December, 2018
20
August, 2021
19
January, 2019
17
October, 2019
8
November, 2019
6
March, 2020
4
May, 2021
1
January, 2018
Available data
565
bam
503
bigWig
419
fastq
386
bed narrowPeak
345
bigBed narrowPeak
119
tsv
53
bed broadPeak
53
bigBed broadPeak
15
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
503
Homo sapiens
Biosample type
1479
tissue
503
cell line
501
primary cell
219
in vitro differentiated cells
2
stem cell
Organ
323
liver
56
artery
56
blood vessel
56
heart
56
vasculature
54
blood
54
bodily fluid
47
pancreas
44
epithelium
12
kidney
8
embryo
Project
501
AMP
2
T1D
Genome assembly (visualization)
498
hg19
438
GRCh38
Lab
491
AMP-T2D consortium
12
Bing Ren, UCSD
Audit category:
52
inconsistent ontology term
1
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
503 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
317
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
53
1
EndoC_BH1
7
33
2
H1-hESC
8
Panc1
3
1
1
RCC 7860 HIF1a re-expression
3
1
RCC 7860 HIF2a over-expression
2
1
RCC 7860 vector
2
1
early embryonic cell
2
glomerular visceral epithelial cell
1
1
iPSC derived cell line
1
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