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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
9
total RNA-seq
5
STARR-seq
1
Hi-C
1
whole genome sequencing assay
Assay category
16
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
32
August, 2021
Available data
12
bed narrowPeak
12
bigWig
9
tsv
1
bedpe bed3+
1
hic
1
vcf
Organism
32
Homo sapiens
Biosample type
32
cell line
4
tissue
Organ
29
liver
2
kidney
Project
32
AMP
Genome assembly (visualization)
13
hg19
Lab
598
AMP-T2D consortium
32
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
1
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
16
9
2
1
1
HEK293T
2
Synthesized DNA
1
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