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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
3
MeRIP-seq
Assay category
77
DNA binding
Target of assay
304
transcription factor
80
control
73
recombinant protein
44
RNA binding protein
38
histone
38
histone modification
23
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
56
November, 2017
9
October, 2019
4
August, 2021
3
February, 2021
3
January, 2019
November, 2018
3
November, 2020
2
November, 2019
Available data
73
bam
59
fastq
13
bigWig
4
tagAlign
Organism
80
Homo sapiens
Biosample type
184
tissue
80
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
60
liver
11
pancreas
5
epithelium
3
blood
3
bodily fluid
3
kidney
2
artery
2
blood vessel
2
heart
2
vasculature
Project
80
AMP
Genome assembly (visualization)
13
hg19
Lab
73
AMP-T2D consortium
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
8
inconsistent ontology term
month_released!
November, 2018
BIOSAMPLE
ASSAY
80 results
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ChIP-seq
MeRIP-seq
cell line
HepG2
60
Panc1
6
EndoC_BH1
2
3
GM12878
3
smooth muscle cell of the coronary artery
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
iPSC derived cell line
1
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