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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
356
ChIP-seq
Assay category
356
DNA binding
Target of assay
356
transcription factor
89
recombinant protein
79
control
65
RNA binding protein
30
chromatin remodeller
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
11
August, 2021
7
October, 2019
1
November, 2019
Available data
356
bigWig
352
bed narrowPeak
349
bam
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
tagAlign
3
tar
Organism
356
Homo sapiens
Biosample type
356
cell line
89
tissue
45
in vitro differentiated cells
10
primary cell
Organ
297
liver
51
blood
51
bodily fluid
7
kidney
1
epithelium
1
pancreas
Project
356
AMP
Genome assembly (visualization)
347
hg19
304
GRCh38
Lab
345
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
356 results
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ChIP-seq
cell line
HepG2
297
GM12878
51
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
EndoC_BH1
1
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