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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
349
ChIP-seq
Assay category
349
DNA binding
Target of assay
349
transcription factor
89
recombinant protein
74
control
63
RNA binding protein
30
chromatin remodeller
23
histone
23
histone modification
12
broad histone mark
11
narrow histone mark
2
other context
2
other post-translational modification
Date released
241
November, 2017
57
November, 2018
25
December, 2018
14
January, 2019
7
October, 2019
5
February, 2021
Available data
348
bam
344
bigWig
340
bed narrowPeak
337
fastq
328
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
5
tagAlign
3
tar
Organism
349
Homo sapiens
Biosample type
349
cell line
89
tissue
34
in vitro differentiated cells
5
primary cell
Organ
286
liver
51
blood
51
bodily fluid
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
epithelium
1
pancreas
Project
349
AMP
Genome assembly (visualization)
340
hg19
308
GRCh38
Lab
349
AMP-T2D consortium
11
Bing Ren, UCSD
Audit category:
7
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
organ_slims!
epithelium
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
cell line
HepG2
286
GM12878
51
smooth muscle cell of the coronary artery
4
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
iPSC derived cell line
1
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