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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
380
ChIP-seq
Assay category
380
DNA binding
Target of assay
361
transcription factor
89
recombinant protein
83
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
248
November, 2017
57
November, 2018
25
December, 2018
15
January, 2019
13
August, 2021
10
October, 2019
5
February, 2021
5
November, 2019
1
March, 2020
1
May, 2021
Available data
375
bigWig
370
bed narrowPeak
366
bam
345
fastq
338
bigBed narrowPeak
50
bed broadPeak
50
bigBed broadPeak
10
tagAlign
3
tar
Organism
380
Homo sapiens
Biosample type
398
tissue
380
cell line
125
primary cell
104
in vitro differentiated cells
1
stem cell
Organ
306
liver
52
blood
52
bodily fluid
10
pancreas
7
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
378
AMP
2
T1D
Genome assembly (visualization)
371
hg19
325
GRCh38
Lab
367
AMP-T2D consortium
13
Bing Ren, UCSD
Audit category:
14
inconsistent ontology term
1
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
20
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
380 results
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ChIP-seq
cell line
HepG2
306
GM12878
52
EndoC_BH1
7
smooth muscle cell of the coronary artery
4
Panc1
3
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
iPSC derived cell line
1
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