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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
127
total RNA-seq
119
ChIP-seq
4
Hi-C
2
Capture-C
2
pCHi-C
Assay category
127
Transcription
119
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
77
histone
77
histone modification
40
narrow histone mark
37
transcription factor
36
broad histone mark
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
84
May, 2021
48
August, 2017
38
December, 2017
31
February, 2018
22
February, 2021
21
August, 2021
6
March, 2020
4
October, 2019
Available data
246
bam
241
bigWig
127
tsv
117
fastq
109
bed narrowPeak
21
bed bed3+
17
tagAlign
14
bigBed narrowPeak
6
bedpe bed3+
4
hic
2
ibed
Organism
254
Homo sapiens
Biosample type
1467
tissue
521
primary cell
515
cell line
254
in vitro differentiated cells
3
stem cell
Organ
55
connective tissue
21
embryo
20
epithelium
14
liver
2
pancreas
1
heart
Project
254
AMP
Genome assembly (visualization)
254
hg19
247
GRCh38
4
hg18
Lab
252
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
98
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
254 results
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total RNA-seq
ChIP-seq
Hi-C
Capture-C
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
48
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
12
pancreatic endoderm
4
13
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