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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
158
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
45
transcription factor
43
narrow histone mark
42
broad histone mark
27
control
11
RNA binding protein
3
chromatin remodeller
Date released
121
May, 2021
53
August, 2017
43
December, 2017
39
February, 2018
22
February, 2021
10
August, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
273
bam
246
bigWig
140
fastq
131
tsv
110
bed narrowPeak
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
311
Homo sapiens
Biosample type
2029
tissue
700
primary cell
611
cell line
311
in vitro differentiated cells
10
stem cell
Organ
65
connective tissue
29
embryo
21
epithelium
15
liver
1
adipose tissue
1
heart
Project
311
AMP
Genome assembly (visualization)
237
hg19
229
GRCh38
4
hg18
Lab
267
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA accessibility
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
311 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
53
5
1
cardiomyocytes
59
embryonic stem cell
40
7
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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