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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
131
ChIP-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
131
DNA binding
DNA accessibility
4
3D chromatin structure
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
127
May, 2021
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
220
bam
199
bigWig
131
tsv
87
fastq
68
bed narrowPeak
26
tagAlign
14
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
284
Homo sapiens
Biosample type
2028
tissue
746
primary cell
631
cell line
284
in vitro differentiated cells
10
stem cell
Organ
29
embryo
24
epithelium
15
liver
12
connective tissue
3
pancreas
1
adipose tissue
1
heart
Project
284
AMP
Genome assembly (visualization)
206
hg19
199
GRCh38
4
hg18
Lab
240
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
August, 2017
BIOSAMPLE
ASSAY
284 results
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total RNA-seq
ChIP-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
7
40
1
neural progenitor cell
7
21
pancreatic endoderm
4
18
1
cardiac precursors (cardiac muscle cell)
19
1
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