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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
177
ChIP-seq
129
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
Assay category
177
DNA binding
131
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
246
bam
226
bigWig
140
fastq
124
tsv
97
bed narrowPeak
20
tagAlign
19
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
321
Homo sapiens
Biosample type
2148
tissue
796
primary cell
587
cell line
321
in vitro differentiated cells
10
stem cell
Organ
77
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
321
AMP
Genome assembly (visualization)
233
hg19
227
GRCh38
4
hg18
Lab
279
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
August, 2021
BIOSAMPLE
ASSAY
321 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
cardiomyocytes
3
59
embryonic stem cell
40
7
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
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