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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
155
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
45
broad histone mark
42
narrow histone mark
38
transcription factor
29
control
9
RNA binding protein
2
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
230
bam
212
bigWig
131
tsv
97
fastq
76
bed narrowPeak
40
tagAlign
9
bed bed3+
7
bedpe bed3+
4
hic
2
ibed
Organism
308
Homo sapiens
Biosample type
2259
tissue
800
primary cell
631
cell line
308
in vitro differentiated cells
7
stem cell
Organ
79
connective tissue
16
embryo
5
epithelium
3
pancreas
1
adipose tissue
1
heart
Project
308
AMP
Genome assembly (visualization)
216
hg19
209
GRCh38
4
hg18
Lab
264
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
101
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
8
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
December, 2017
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
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