Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
121
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
174
DNA binding
123
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
96
histone
96
histone modification
49
transcription factor
48
broad histone mark
47
narrow histone mark
29
control
11
RNA binding protein
3
chromatin remodeller
Date released
127
May, 2021
67
August, 2017
43
December, 2017
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
234
bam
215
bigWig
116
tsv
101
fastq
94
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
312
Homo sapiens
Biosample type
2307
tissue
800
primary cell
631
cell line
312
in vitro differentiated cells
10
stem cell
Organ
79
connective tissue
24
epithelium
16
embryo
15
liver
3
pancreas
1
adipose tissue
1
heart
Project
312
AMP
Genome assembly (visualization)
223
hg19
216
GRCh38
4
hg18
Lab
268
AMP-T2D consortium
42
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
February, 2018
BIOSAMPLE
ASSAY
312 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
cardiomyocytes
3
59
embryonic stem cell
37
5
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
+ See 24 more…
See all biosamples
Download