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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
155
ChIP-seq
52
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
155
DNA binding
54
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
91
histone
91
histone modification
46
broad histone mark
44
narrow histone mark
33
transcription factor
31
control
6
RNA binding protein
3
chromatin remodeller
Date released
May, 2021
67
August, 2017
43
December, 2017
39
February, 2018
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
188
bam
162
bigWig
140
fastq
105
bed narrowPeak
52
tsv
34
tagAlign
21
bed bed3+
14
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
224
Homo sapiens
Biosample type
2227
tissue
626
cell line
607
primary cell
224
in vitro differentiated cells
10
stem cell
Organ
78
connective tissue
27
embryo
19
epithelium
15
liver
1
adipose tissue
Project
224
AMP
Genome assembly (visualization)
170
hg19
163
GRCh38
4
hg18
Lab
222
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
37
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
assay_slims!
DNA accessibility
month_released!
May, 2021
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
adipocyte
67
5
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
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