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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ChIP-seq
136
total RNA-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
149
DNA binding
138
Transcription
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
111
May, 2021
45
August, 2017
39
February, 2018
32
December, 2017
30
August, 2021
22
February, 2021
8
March, 2020
4
February, 2023
4
January, 2018
4
October, 2019
2
December, 2019
1
August, 2018
Available data
236
bam
209
bigWig
131
tsv
107
fastq
78
bed narrowPeak
36
tagAlign
15
bed bed3+
12
bigBed narrowPeak
7
bedpe bed3+
4
hic
2
ibed
Organism
302
Homo sapiens
Biosample type
2178
tissue
790
primary cell
302
in vitro differentiated cells
270
cell line
10
stem cell
Organ
57
connective tissue
26
embryo
21
epithelium
13
liver
2
pancreas
1
adipose tissue
1
heart
Project
302
AMP
Genome assembly (visualization)
217
hg19
210
GRCh38
4
hg18
Lab
270
AMP-T2D consortium
30
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
7
inconsistent control read length
assay_slims!
DNA accessibility
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
302 results
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ChIP-seq
total RNA-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
adipocyte
45
5
1
embryonic stem cell
28
7
1
neural progenitor cell
21
7
cardiac precursors (cardiac muscle cell)
19
1
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