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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
198
ChIP-seq
42
ATAC-seq
1
DNase-seq
Assay category
198
DNA binding
138
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
55
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
68
August, 2017
48
May, 2021
43
December, 2017
33
August, 2021
24
February, 2018
12
February, 2023
5
November, 2019
4
February, 2021
4
October, 2019
Available data
164
bam
132
bed narrowPeak
128
bigWig
121
fastq
40
tagAlign
23
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
241
Homo sapiens
Biosample type
1337
tissue
567
primary cell
515
cell line
241
in vitro differentiated cells
3
stem cell
Organ
85
connective tissue
22
embryo
22
epithelium
15
liver
3
pancreas
Project
241
AMP
Genome assembly (visualization)
162
hg19
138
GRCh38
Lab
194
AMP-T2D consortium
42
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
17
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
BIOSAMPLE
ASSAY
241 results
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ChIP-seq
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
8
1
embryonic stem cell
40
6
neural progenitor cell
21
10
pancreatic endoderm
18
hepatocyte
15
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