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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
52
total RNA-seq
37
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
54
Transcription
38
DNA accessibility
4
3D chromatin structure
Date released
May, 2021
26
February, 2021
21
August, 2021
16
February, 2023
15
February, 2018
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
66
bam
60
bigWig
52
tsv
22
bed narrowPeak
21
fastq
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
5
bed bed3
4
hic
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
107
Homo sapiens
Biosample type
1830
tissue
724
primary cell
158
cell line
107
in vitro differentiated cells
7
stem cell
Organ
29
connective tissue
5
embryo
1
adipose tissue
Project
107
AMP
Genome assembly (visualization)
94
hg19
66
GRCh38
4
hg18
Lab
100
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
Audit category:
43
inconsistent ontology term
2
audit script error
assay_title!
ChIP-seq
month_released!
May, 2021
BIOSAMPLE
ASSAY
107 results
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total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
1
1
neural progenitor cell
7
10
adipocyte
5
8
1
1
cardiomyocytes (cardiac muscle cell)
2
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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