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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1173
total RNA-seq
1065
ChIP-seq
302
ATAC-seq
179
DNase-seq
single cell RNA-seq
87
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1189
Transcription
1065
DNA binding
513
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
705
histone modification
704
histone
364
narrow histone mark
339
broad histone mark
224
control
138
transcription factor
34
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
565
February, 2021
352
August, 2017
250
October, 2019
193
May, 2020
172
May, 2021
165
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
110
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
65
May, 2022
48
March, 2020
45
November, 2019
39
February, 2018
26
November, 2018
25
February, 2020
23
October, 2017
12
May, 2023
10
April, 2020
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
1
August, 2018
1
August, 2022
Available data
2198
bam
1991
bigWig
1102
tsv
1076
bed narrowPeak
578
bigBed narrowPeak
518
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
147
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2946
Homo sapiens
Biosample type
2563
tissue
901
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
644
connective tissue
508
pancreas
489
adipose tissue
375
liver
265
brain
235
kidney
181
heart
158
bone element
127
blood vessel
127
vasculature
122
limb
81
musculature of body
71
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
18
ureter
16
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2914
AMP
31
T1D
10
LungMap
Genome assembly (visualization)
2084
GRCh38
2052
hg19
4
hg18
Lab
2656
AMP-T2D consortium
131
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
204
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
2955 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
298
71
68
1
4
7
3
1
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
2
1
3
1
1
1
kidney
49
27
75
13
6
1
1
1
bone element
84
+ See 170 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
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