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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Date released
14
August, 2021
12
February, 2023
6
March, 2020
6
October, 2019
5
May, 2021
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2017
1
August, 2018
Available data
22
bed narrowPeak
18
bam
17
bigWig
7
bed bedgraph
7
bedpe bed3+
6
bed bed3+
6
fastq
5
bed bed3
4
hic
4
tsv
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
60
Homo sapiens
Biosample type
833
tissue
562
primary cell
65
cell line
60
in vitro differentiated cells
7
stem cell
Organ
21
connective tissue
1
adipose tissue
1
embryo
Project
60
AMP
Genome assembly (visualization)
51
hg19
18
GRCh38
4
hg18
Lab
48
AMP-T2D consortium
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
2
audit script error
assay_title!
total RNA-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
60 results
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ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
8
1
1
neural progenitor cell
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
embryonic stem cell
6
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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