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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
477
ChIP-seq
383
total RNA-seq
242
ATAC-seq
189
single cell RNA-seq
56
snATAC-seq
47
WGBS
32
DNase-seq
22
pCHi-C
14
Hi-C
10
RRBS
4
GRO-seq
2
Capture-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
242
DNA accessibility
Date released
100
May, 2020
39
May, 2022
24
February, 2023
18
May, 2021
14
September, 2018
12
August, 2021
7
August, 2020
6
October, 2019
5
February, 2021
5
November, 2019
5
September, 2017
3
August, 2017
3
September, 2020
1
November, 2020
Available data
101
bam
90
bigWig
60
bed narrowPeak
39
zippedFastqFolder
32
fastq
24
bigBed narrowPeak
12
tsv
7
bed bedgraph
6
bed bed3
4
bed bed3+
3
txt
Organism
242
Homo sapiens
Biosample type
260
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
72
epithelium
71
pancreas
19
connective tissue
1
liver
Project
193
AMP
49
HPAP
Genome assembly (visualization)
126
hg19
66
GRCh38
Lab
183
AMP-T2D consortium
49
Klaus Kaestner, Upenn
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
BIOSAMPLE
ASSAY
242 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
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