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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
192
DNA binding
Target of assay
111
histone
111
histone modification
56
broad histone mark
54
narrow histone mark
44
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
62
August, 2017
43
May, 2021
42
December, 2017
24
February, 2018
21
August, 2021
Available data
140
bam
114
fastq
110
bed narrowPeak
110
bigWig
40
tagAlign
19
bed bed3+
14
bigBed narrowPeak
Organism
192
Homo sapiens
Biosample type
841
tissue
471
cell line
235
primary cell
192
in vitro differentiated cells
3
stem cell
Organ
62
connective tissue
22
epithelium
21
embryo
15
liver
3
pancreas
Project
192
AMP
Genome assembly (visualization)
115
GRCh38
114
hg19
Lab
155
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
17
inconsistent control read length
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
in vitro differentiated cells
adipocyte
62
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
17
hepatocyte
15
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