Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
183
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
183
DNA binding
Target of assay
100
histone
100
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
67
August, 2017
43
May, 2021
28
December, 2017
24
February, 2018
21
August, 2021
Available data
131
bam
105
fastq
101
bigWig
96
bed narrowPeak
40
tagAlign
19
bed bed3+
Organism
183
Homo sapiens
Biosample type
712
tissue
275
primary cell
183
in vitro differentiated cells
106
cell line
3
stem cell
Organ
67
connective tissue
22
embryo
22
epithelium
liver
3
pancreas
Project
183
AMP
Genome assembly (visualization)
106
GRCh38
105
hg19
Lab
146
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
Audit category:
6
missing controlled_by
Audit category:
17
inconsistent control read length
organ_slims!
liver
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
in vitro differentiated cells
adipocyte
67
embryonic stem cell
40
neural progenitor cell
21
pancreatic endoderm
18
definitive endodermal cell
8
+ See 7 more…
See all biosamples
Download